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1

Essential Core of Protein−Protein Interaction Network in Escherichia coli

Lin, Chen-Ching, Juan, Hsueh-Fen, Hsiang, Jen-Tsung, Hwang, Yih-Chii, Mori, Hirotada, Huang, Hsuan-Cheng

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 2.25 MB

english, 2009

2

[IEEE Proceedings. IEEE Fifth International Symposium on Multimedia Software Engineering - Taichung, Taiwan (2003.12.10-2003.12.12)] Fifth International Symposium on Multimedia Software Engineering, 2003. Proceedings. - Design of an incremental clustering package for protein function and family analysis

Chien-Yu Chen,, Hsueh-Fen Juan,, Po-Jen Hsiao,, Shui-Tein Chen,, Hsiang-Wen Tseng,, Yen-Jen Oyang,

Year:

2003

Language:

english

File:

PDF, 419 KB

english, 2003

3

Ganoderma lucidum Polysaccharides Induce Macrophage-Like Differentiation in Human Leukemia THP-1 Cells via Caspase and p53 Activation

Hsu, Jia-Wei, Huang, Hsuan-Cheng, Chen, Shui-Tein, Wong, Chi-Huey, Juan, Hsueh-Fen

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2011

Language:

english

File:

PDF, 3.41 MB

english, 2011

4

A Practical Guide to Cancer Systems Biology || Quantitative Proteome: The Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)

Juan, Hsueh-Fen, Huang, Hsuan-Cheng

Year:

2018

Language:

english

File:

PDF, 367 KB

english, 2018

5

A Practical Guide to Cancer Systems Biology || Transcriptomic Data Analysis: RNA-Seq Analysis Using Galaxy

Juan, Hsueh-Fen, Huang, Hsuan-Cheng

Year:

2018

Language:

english

File:

PDF, 3.15 MB

english, 2018

6

RNA-binding proteomics reveals MATR3 interacting with lncRNA SNHG1 to enhance neuroblastoma progression

Yang, Tz-Wen, Sahu, Divya, Chang, Yi-Wen, Hsu, Chia-Lang, Hsieh, Chiao-Hui, Huang, Hsuan-Cheng, Juan, Hsueh-Fen

Journal:

Journal of Proteome Research

Year:

2018

Language:

english

File:

PDF, 7.67 MB

english, 2018

7

Biomic study of human myeloid leukemia cells differentiation to macrophages using DNA array, proteomic, and bioinformatic analytical methods

Hsueh-Fen Juan, John Yi-Chung Lin, Wen-Hwei Chang, Chi-Yue Wu, Tai-Long Pan, Min-Jen Tseng, Kay-Hooi Khoo, Shui-Tein Chen

Journal:

ELECTROPHORESIS

Year:

2002

Language:

english

File:

PDF, 520 KB

english, 2002

8

ATP13A2 variability in Taiwanese Parkinson's disease

Chiung-Mei Chen, Chih-Hsin Lin, Hsueh-Fen Juan, Fen-Ju Hu, Ya-Chin Hsiao, Hsin-Yi Chang, Chih-Ying Chao, I-Cheng Chen, Li-Ching Lee, Tsu-Wei Wang, Ya-Tang Chen, Yi-Tsun Chen, Guey-Jen Lee-Chen, Yih-Ru

Journal:

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Year:

2011

Language:

english

File:

PDF, 1.07 MB

english, 2011

9

An agent-based system to discover protein–protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints

Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Fong Tsai, Hsuan-Cheng Huang

Journal:

Journal of Computational Chemistry

Year:

2006

Language:

english

File:

PDF, 789 KB

english, 2006

10

Bioinformatics, functional genomics, and proteomics study of Bacillus sp.

Supachok Sinchaikul, Boonyaras Sookkheo, Supachai Topanuruk, Hsueh-Fen Juan, Suree Phutrakul, Shui-Tein Chen

Journal:

Journal of Chromatography B

Year:

2002

Language:

english

File:

PDF, 4.67 MB

english, 2002

11

Coregulation of transcription factors and microRNAs in human transcriptional regulatory network

Cho-Yi Chen, Shui-Tein Chen, Chiou-Shann Fuh, Hsueh-Fen Juan, Hsuan-Cheng Huang

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.98 MB

english, 2011

12

Integrative network analysis reveals active microRNAs and their functions in gastric cancer

Chien-Wei Tseng, Chen-Ching Lin, Chiung-Nien Chen, Hsuan-Cheng Huang, Hsueh-Fen Juan

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 2.27 MB

english, 2011

13

Identification of tumor-associated plasma biomarkers using proteomic techniques: From mouse to human

Hsueh-Fen Juan, Jenn-Han Chen, Wei-Tse Hsu, Su-Ching Huang, Shui-Tein Chen, John Yi-Chung Lin, Yu-Wang Chang, Chih-Yin Chiang, Li-Li Wen, De-Chuan Chan, Yao-Chi Liu, Yu-Ju Chen

Journal:

Year:

2004

Language:

english

File:

PDF, 549 KB

english, 2004

14

A new application of microwave technology to proteomics

Hsueh-Fen Juan, Shing-Chuan Chang, Hsuan-Cheng Huang, Shui-Tein Chen

Journal:

Year:

2005

Language:

english

File:

PDF, 186 KB

english, 2005

15

Proteomics analysis of a novel compound: Cyclic RGD in breast carcinoma cell line MCF-7

Hsueh-Fen Juan, I-Hsiu Wang, Tsui-Chin Huang, Jia-Je Li, Shui-Tein Chen, Hsuan-Cheng Huang

Journal:

Year:

2006

Language:

english

File:

PDF, 500 KB

english, 2006

16

Lipopolysaccharide-stimulated responses in rat aortic endothelial cells by a systems biology approach

Hsiang-Wen Tseng, Hsueh-Fen Juan, Hsuan-Cheng Huang, John Yi-Chung Lin, Supachok Sinchaikul, Tzi-Chung Lai, Chieh-Fu Chen, Shui-Tein Chen, Guei-Jane Wang

Journal:

Year:

2006

Language:

english

File:

PDF, 658 KB

english, 2006

17

Characterization of microRNA-regulated protein-protein interaction network

Chun-Wei Hsu, Hsueh-Fen Juan, Hsuan-Cheng Huang

Journal:

Year:

2008

Language:

english

File:

PDF, 305 KB

english, 2008

18

Annexin A4: A novel molecular marker for gastric cancer with Helicobacter pylori infection using proteomics approach

Li-Ling Lin, Chiung-Nien Chen, Wei-Chou Lin, Po-Huang Lee, King-Jen Chang, Yo-Ping Lai, Jin-Town Wang, Hsueh-Fen Juan

Journal:

PROTEOMICS - Clinical Applications

Year:

2008

Language:

english

File:

PDF, 621 KB

english, 2008

19

Identification of 14-3-3β in human gastric cancer cells and its potency as a diagnostic and prognostic biomarker

Chien-Wei Tseng, Jyh-Chin Yang, Chiung-Nien Chen, Hsuan-Cheng Huang, Kai-Neng Chuang, Chen-Ching Lin, Hong-Shiee Lai, Po-Huang Lee, King-Jen Chang, Hsueh-Fen Juan

Journal:

PROTEOMICS - Clinical Applications

Year:

2011

Language:

english

File:

PDF, 67 KB

english, 2011

20

Insulin-like growth factor II mRNA-binding protein 3 expression predicts unfavorable prognosis in patients with neuroblastoma

Szu-Ta Chen, Yung-Ming Jeng, Cheng-Chi Chang, Hsiu-Hao Chang, Min-Chuan Huang, Hsueh-Fen Juan, Chun-Hua Hsu, Hsinyu Lee, Yung-Feng Liao, Ya-Ling Lee, Wen-Ming Hsu, Hong-Shiee Lai

Journal:

Year:

2011

Language:

english

File:

PDF, 568 KB

english, 2011

21

A proteomics study of the mung bean epicotyl regulated by brassinosteroids under conditions of chilling stress

Bin Huang, Chien-Hua Chu, Shu-Ling Chen, Hsueh-Fen Juan, Yih-Ming Chen

Journal:

Cellular & Molecular Biology Letters

Year:

2006

Language:

english

File:

PDF, 1.44 MB

english, 2006

22

Calreticulin Mediates Nerve Growth Factor-Induced Neuronal Differentiation

Yu-Yin Shih, Akira Nakagawara, Hsinyu Lee, Hsueh-Fen Juan, Yung-Ming Jeng, Dong-Tsamn Lin, Yung-Li Yang, Yeou-Guang Tsay, Min-Chuan Huang, Chien-Yuan Pan, Wen-Ming Hsu, Yung-Feng Liao

Journal:

Journal of Molecular Neuroscience

Year:

2012

Language:

english

File:

PDF, 754 KB

english, 2012

23

An apoptosis-related gene network induced by novel compound-cRGD in human breast cancer cells

Tsui-Chin Huang, Hsuan-Cheng Huang, Chih-Chin Chang, Hsin-Yi Chang, Chern-Han Ou, Chun-Hua Hsu, Shui-Tein Chen, Hsueh-Fen Juan

Journal:

Year:

2007

Language:

english

File:

PDF, 552 KB

english, 2007

24

Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR

Tsui-Chin Huang, Hsin-Yi Chang, Cheng-Yu Chen, Pei-Yi Wu, Hsinyu Lee, Yung-Feng Liao, Wen-Ming Hsu, Hsuan-Cheng Huang, Hsueh-Fen Juan

Journal:

Year:

2011

Language:

english

File:

PDF, 775 KB

english, 2011

25

Corrigendum to “Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR” [FEBS Lett. 585 (2011) 3582–3586]

Tsui-Chin Huang, Hsin-Yi Chang, Cheng-Yu Chen, Pei-Yi Wu, Hsinyu Lee, Yung-Feng Liao, Wen-Ming Hsu, Hsuan-Cheng Huang, Hsueh-Fen Juan

Journal:

Year:

2012

Language:

english

File:

PDF, 168 KB

english, 2012

26

MeInfoText: associated gene methylation and cancer information from text mining

Yu-Ching Fang, Hsuan-Cheng Huang, Hsueh-Fen Juan

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 978 KB

english, 2008

27

RINGdb: An integrated database for G protein-coupled receptors and regulators of G protein signaling

Yu-Ching Fang, Wei-Hsin Sun, Li-Cheng Wu, Hsien-Da Huang, Hsueh-Fen Juan, Jorng-Tzong Horng

Journal:

Year:

2006

Language:

english

File:

PDF, 562 KB

english, 2006

28

Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infectedPenaeus monodon

Jiann-Horng Leu, Chih-Chin Chang, Jin-Lu Wu, Chun-Wei Hsu, Ikuo Hirono, Takashi Aoki, Hsueh-Fen Juan, Chu-Fang Lo, Guang-Hsiung Kou, Hsuan-Cheng Huang

Journal:

Year:

2007

Language:

english

File:

PDF, 375 KB

english, 2007

29

Ganoderma lucidumpolysaccharides in human monocytic leukemia cells: from gene expression to network construction

Kun-Chieh Cheng, Hsuan-Cheng Huang, Jenn-Han Chen, Jia-Wei Hsu, Hsu-Chieh Cheng, Chern-Han Ou, Wen-Bin Yang, Shui-Tein Chen, Chi-Huey Wong, Hsueh-Fen Juan

Journal:

Year:

2007

Language:

english

File:

PDF, 968 KB

english, 2007

30

TCMGeneDIT: a database for associated traditional Chinese medicine, gene and disease information using text mining

Yu-Ching Fang, Hsuan-Cheng Huang, Hsin-Hsi Chen, Hsueh-Fen Juan

Journal:

BMC Complementary and Alternative Medicine

Year:

2008

Language:

english

File:

PDF, 681 KB

english, 2008

31

Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy

Chen-Ching Lin, Jen-Tsung Hsiang, Chia-Yi Wu, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 3.17 MB

english, 2010

32

Comparison of Three Classes of Snake Neurotoxins by Homology Modeling and Computer Simulation Graphics

Hsueh-Fen Juan, Chin-Chun Hung, Kung-Tsung Wang, Shyh-Horng Chiou

Journal:

Biochemical and Biophysical Research Communications

Year:

1999

Language:

english

File:

PDF, 627 KB

english, 1999

33

Discovery of biomarkers for gastric cancer: A proteomics approach

Li-Ling Lin, Hsuan-Cheng Huang, Hsueh-Fen Juan

Journal:

Journal of Proteomics

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

34

Breast Tumor Microenvironment: Proteomics Highlights the Treatments Targeting Secretome

Chen, Shui-Tein, Pan, Tai-Long, Juan, Hsueh-Fen, Chen, Tai-Yuan, Lin, Yih-Shyan, Huang, Chun-Ming

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 272 KB

english, 2008

35

Identification of 14-3-3β in human gastric cancer cells and its potency as a diagnostic and prognostic biomarker

Chien-Wei Tseng, Jyh-Chin Yang, Chiung-Nien Chen, Hsuan-Cheng Huang, Kai-Neng Chuang, Chen-Ching Lin, Hong-Shiee Lai, Po-Huang Lee, King-Jen Chang, Hsueh-Fen Juan

Journal:

Year:

2011

Language:

english

File:

PDF, 500 KB

english, 2011

36

Predicting essential genes based on network and sequence analysis

Hwang, Yih-Chii, Lin, Chen-Ching, Chang, Jen-Yun, Mori, Hirotada, Juan, Hsueh-Fen, Huang, Hsuan-Cheng

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 1.67 MB

english, 2009

37

Crosstalk between transcription factors and microRNAs in human protein interaction network

Chen-Ching Lin, Ya-Jen Chen, Cho-Yi Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.38 MB

english, 2012

38

Phosphoproteomic Analysis of Rhodopseudomonas palustris Reveals the Role of Pyruvate Phosphate Dikinase Phosphorylation in Lipid Production

Hu, Chia-Wei, Lin, Miao-Hsia, Huang, Hsuan-Cheng, Ku, Wei-Chi, Yi, Tsun-Hsuan, Tsai, Chia-Feng, Chen, Yu-Ju, Sugiyama, Naoyuki, Ishihama, Yasushi, Juan, Hsueh-Fen, Wu, Shih-Hsiung

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 2.61 MB

english, 2012

39

Helicobacter pylori Disrupts Host Cell Membranes, Initiating a Repair Response and Cell Proliferation

Lin, Li-Ling, Huang, Hsuan-Cheng, Ogihara, Satoshi, Wang, Jin-Town, Wu, Meng-Chuan, McNeil, Paul L., Chen, Chiung-Nien, Juan, Hsueh-Fen

Journal:

International Journal of Molecular Sciences

Year:

2012

Language:

english

File:

PDF, 878 KB

english, 2012

40

Identification of MicroRNA 395a in 24-Epibrassinolide-Regulated Root Growth of Arabidopsis thaliana Using MicroRNA Arrays

Lin, Li-Ling, Wu, Chia-Chi, Huang, Hsuan-Cheng, Chen, Huai-Ju, Hsieh, Hsu-Liang, Juan, Hsueh-Fen

Journal:

International Journal of Molecular Sciences

Year:

2013

Language:

english

File:

PDF, 3.06 MB

english, 2013

41

Quantitative Proteomics Reveals Diverse Roles of miR-148a from Gastric Cancer Progression to Neurological Development

Hu, Chia-Wei, Tseng, Chien-Wei, Chien, Chih-Wei, Huang, Hsuan-Cheng, Ku, Wei-Chi, Lee, Shyh-Jye, Chen, Yu-Ju, Juan, Hsueh-Fen

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 3.69 MB

english, 2013

42

Deciphering molecular determinants of chemotherapy in gastrointestinal malignancy using systems biology approaches

Lin, Li-Ling, Huang, Hsuan-Cheng, Juan, Hsueh-Fen

Journal:

Drug Discovery Today

Year:

2014

Language:

english

File:

PDF, 637 KB

english, 2014

43

A histone deacetylase inhibitor YCW1 with antitumor and antimetastasis properties enhances cisplatin activity against non-small cell lung cancer in preclinical studies

Huang, Wei-Jan, Tang, Yen-An, Chen, Mei-Yu, Wang, Ying-Jan, Hu, Fu-Han, Wang, Tseng-Wei, Chao, Shi-Wei, Chiu, Hui-Wen, Yeh, Ya-Ling, Chang, Hsin-Yi, Juan, Hsueh-Fen, Lin, Pinpin, Wang, Yi-Ching

Journal:

Year:

2014

Language:

english

File:

PDF, 3.21 MB

english, 2014

44

Quantitative Proteomic and Genomic Profiling Reveals Metastasis-Related Protein Expression Patterns in Gastric Cancer Cells

Chen, Yet-Ran, Juan, Hsueh-Fen, Huang, Hsuan-Cheng, Huang, Hsin-Hung, Lee, Ya-Jung, Liao, Mei-Yueh, Tseng, Chien-Wei, Lin, Li-Ling, Chen, Jeou-Yuan, Wang, Mei-Jung, Chen, Jenn-Han, Chen, Yu-Ju

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 644 KB

english, 2006

45

MultiProtIdent: Identifying Proteins Using Database Search and Protein−Protein Interactions

Huang, Hsien-Da, Lee, Tzong-Yi, Wu, Li-Cheng, Lin, Feng-Mao, Juan, Hsueh-Fen, Horng, Jorng-Tzong, Tsou, Ann-Ping

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 259 KB

english, 2005

46

Targeting Therapy for Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B

Huang, Tsui-Chin, Chang, Hsin-Yi, Hsu, Chun-Hua, Kuo, Wen-Hung, Chang, King-Jen, Juan, Hsueh-Fen

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 14.77 MB

english, 2008

47

MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma

Huang, Chen-Tsung, Oyang, Yen-Jen, Huang, Hsuan-Cheng, Juan, Hsueh-Fen

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 36.61 MB

english, 2014

48

[IEEE Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Taichung, Taiwan (19-21 May 2004)] Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - An efficient mechanism for prediction of protein-ligand interactions based on analysis of protein tertiary substructures

Darby Tien-Hau Chang,, Chien-Yu Chen,, Yen-Jen Oyang,, Hsueh-Fen Juan,, Hsuan-Cheng Huang,

Year:

2004

Language:

english

File:

PDF, 309 KB

english, 2004

49

[IEEE Conference, Emerging Information Technology 2005. - NTU, Taipei, Taiwan (Aug. 15-16, 2005)] Conference, Emerging Information Technology 2005. - Gene annotation and network in cancer research

Hsueh-Fen Juan,

Year:

2005

Language:

english

File:

PDF, 50 KB

english, 2005

50

The effect of narrow bandwidth infrared radiation on the growth of Escherichia coli

Tsai, Shang-Ru, Huang, Tsui-Chin, Liang, Chia-Ming, Chang, Hsin-Yi, Chang, Yi-Tsung, Huang, Hsuan-Cheng, Juan, Hsueh-Fen, Lee, Si-Chen

Journal:

Applied Physics Letters

Year:

2011

Language:

english

File:

PDF, 875 KB

english, 2011